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    LOC4324979 uncharacterized LOC4324979 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324979, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4324979
    Gene description
    uncharacterized LOC4324979
    Locus tag
    OSNPB_010907300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0497A05.6
    Expression
    Ubiquitous expression in flower buds (RPKM 14.2), flowers (RPKM 14.1) and 6 other tissues See more
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    Genomic context

    See LOC4324979 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40121277..40126428)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39486903..39492099)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324977 Neighboring gene BAG family molecular chaperone regulator 2 Neighboring gene lysine-specific demethylase JMJ705-like Neighboring gene cysteine proteinase EP-B 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4324979
    Names
    B1417F08.19-1
    B1417F08.19-2
    GPI transamidase component PIG-S
    Os01g0907300
    putative phosphatidylinositol glycan class S

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40121277..40126428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766903.3XP_015622389.1  uncharacterized protein LOC4324979

      UniProtKB/TrEMBL
      A0A0P0VBV8, B9EVG7, Q5N714, Q8LIW5
      Conserved Domains (1) summary
      pfam10510
      Location:58601
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein