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    LOC4342678 uncharacterized LOC4342678 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342678, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342678
    Gene description
    uncharacterized LOC4342678
    Locus tag
    OSNPB_070204500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 32.4), roots before flowering (RPKM 32.1) and 6 other tissues See more
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    Genomic context

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    See LOC4342678 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5690064..5699930, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5613818..5623722, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342676 Neighboring gene uncharacterized LOC4342677 Neighboring gene uncharacterized LOC136357495 Neighboring gene uncharacterized LOC112939705

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342678
    Names
    5'-nucleotidase SurE
    Os07g0204500
    P0431A02.28
    putative stationary phase survival protein SurE

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5690064..5699930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792217.3 → XP_015647703.1  uncharacterized protein LOC4342678 isoform X1

      UniProtKB/TrEMBL
      B8B887
      Conserved Domains (1) summary
      pfam01975
      Location:17 → 209
      SurE; Survival protein SurE

    2. XM_015792218.3 → XP_015647704.1  uncharacterized protein LOC4342678 isoform X3

      UniProtKB/TrEMBL
      B7E331, B9FW32
      Conserved Domains (1) summary
      pfam01975
      Location:17 → 209
      SurE; Survival protein SurE

    3. XM_066312468.1 → XP_066168565.1  uncharacterized protein LOC4342678 isoform X2

      UniProtKB/TrEMBL
      B8B887

    4. XM_066312469.1 → XP_066168566.1  uncharacterized protein LOC4342678 isoform X4

      UniProtKB/TrEMBL
      B9FW32, Q0D7W5, Q7XB62

    RNA

    1. XR_010742563.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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