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    LOC4346304 calcium-binding protein CBP-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346304, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346304
    Gene description
    calcium-binding protein CBP-like
    Locus tag
    OSNPB_080558100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0562A06.1; OJ1150_A11.32
    Expression
    Broad expression in mature seeds (RPKM 37.2), roots before flowering (RPKM 29.2) and 5 other tissues See more
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    Genomic context

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    See LOC4346304 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28079248..28081688, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27931871..27934500, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable uridine nucleosidase 1 Neighboring gene large ribosomal subunit protein uL1-like Neighboring gene uncharacterized LOC4346305 Neighboring gene uncharacterized LOC4346306 Neighboring gene kinesin-like protein KIN-5C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding protein CBP-like
    Names
    Os08g0558100
    probable calcium-binding protein CML48
    putative fiber protein Fb1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28079248..28081688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794996.2 → XP_015650482.1  calcium-binding protein CBP-like

      UniProtKB/TrEMBL
      A2YY31, B9FYJ1, Q6YZJ1
      Conserved Domains (1) summary
      cd16180
      Location:83 → 250
      EFh_PEF_Group_I; Penta-EF hand, calcium binding motifs, found in Group I PEF proteins
    Nucleotide Protein
    Heading Accession and Version

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