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    LOC4329164 rRNA (cytosine-C(5))-methyltransferase NOP2C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329164, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329164
    Gene description
    rRNA (cytosine-C(5))-methyltransferase NOP2C
    Locus tag
    OSNPB_020320100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 9.8), roots after flowering (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    See LOC4329164 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (12793358..12797721, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (12757842..12762238, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329163 Neighboring gene plant cysteine oxidase 3 Neighboring gene fatty-acid-binding protein 3, chloroplastic Neighboring gene uncharacterized LOC107277773

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rRNA (cytosine-C(5))-methyltransferase NOP2C
    Names
    OSJNBa0086N11.24
    Os02g0320100
    phosphate/phosphoenolpyruvate translocator-like
    probable 28S rRNA (cytosine-C(5))-methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      12793358..12797721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307749.1 → XP_066163846.1  rRNA (cytosine-C(5))-methyltransferase NOP2C

    RNA

    1. XR_010739495.1 RNA Sequence

    2. XR_010739494.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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