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    LOC4330879 uncharacterized LOC4330879 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330879, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330879
    Gene description
    uncharacterized LOC4330879
    Locus tag
    OSNPB_020772500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1611_C08.15
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    Genomic context

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    See LOC4330879 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33097466..33106649)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32602122..32611324)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative transcription elongation factor SPT5 homolog 1 Neighboring gene uncharacterized LOC4330878 Neighboring gene uncharacterized LOC107277523 Neighboring gene uncharacterized LOC9267910 Neighboring gene universal stress protein PHOS32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330879
    Names
    Os02g0772500
    protein NRDE2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33097466..33106649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771633.3 → XP_015627119.1  uncharacterized protein LOC4330879

      UniProtKB/TrEMBL
      B8AJ73, B9F3H2, Q6ZHF3
      Conserved Domains (3) summary
      pfam08424
      Location:296 → 685
      NRDE-2; necessary for RNA interference
      cd22200
      Location:163 → 267
      NRDE2_MID; MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins
      cl26712
      Location:977 → 1123
      U3_assoc_6; U3 small nucleolar RNA-associated protein 6
    Nucleotide Protein
    Heading Accession and Version

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