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    LOC4339996 nudix hydrolase 14, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339996, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339996
    Gene description
    nudix hydrolase 14, chloroplastic
    Locus tag
    OSNPB_060129700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 8.5), leaves before flowering (RPKM 6.4) and 6 other tissues See more
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    Genomic context

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    See LOC4339996 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1731590..1734232, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1574538..1577199, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene SPX domain-containing membrane protein Os06g0129400-like Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene uncharacterized LOC4339997 Neighboring gene cytochrome P450 704C1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP-glucose pyrophosphohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ADP-ribose pyrophosphohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleoside phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribose phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 14, chloroplastic
    Names
    MutT/nudix protein-like
    Os06g0129700
    P0538C01.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1731590..1734232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786236.3 → XP_015641722.1  nudix hydrolase 14, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WSD5, A2Y8U9, Q0DEX6, Q9SNS9
      Conserved Domains (1) summary
      PLN03143
      Location:20 → 311
      PLN03143; nudix hydrolase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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