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    LOC4344922 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344922, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344922
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_080205100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 17.2), roots after flowering (RPKM 16.0) and 6 other tissues See more
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    Genomic context

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    See LOC4344922 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6178403..6182384)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (6127411..6131387)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene AUGMIN subunit 2 Neighboring gene hydroxycinnamoyltransferase 4-like Neighboring gene disease resistance protein RGA5-like Neighboring gene equilibrative nucleotide transporter 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os08g0205100
    P0486F07.25
    putative RGH2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      6178403..6182384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792567.3 → XP_015648053.1  disease resistance protein RGA5-like

      UniProtKB/TrEMBL
      A3BQL7
      Conserved Domains (3) summary
      cd14798
      Location:14 → 137
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:177 → 462
      NB-ARC; NB-ARC domain
      cl21455
      Location:201 → 282
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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