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    LOC4331323 expansin-B1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331323, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331323
    Gene description
    expansin-B1-like
    Locus tag
    OSNPB_030106500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331323 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (394189..395391)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (386865..388100)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene branched-chain amino acid aminotransferase 2, chloroplastic Neighboring gene uncharacterized LOC136355801 Neighboring gene expansin-B10-like Neighboring gene expansin-B13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sexual reproduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    expansin-B1-like
    Names
    Os03g0106500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      394189..395391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773699.3 → XP_015629185.1  expansin-B1-like

      UniProtKB/Swiss-Prot
      Q0DVY5, Q0DVY7, Q0DVY8, Q10SZ3, Q40638, Q8GSC5, Q8H7T5, Q946J4, Q9LD01
      UniProtKB/TrEMBL
      I3QD42
      Conserved Domains (2) summary
      pfam01357
      Location:171 → 246
      Pollen_allerg_1; Pollen allergen
      cd22275
      Location:41 → 162
      DPBB_EXPB_N; N-terminal double-psi beta-barrel fold domain of the beta-expansin subfamily
    Nucleotide Protein
    Heading Accession and Version

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