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    LOC4345762 12-oxophytodienoate reductase 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345762, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345762
    Gene description
    12-oxophytodienoate reductase 7-like
    Locus tag
    OSNPB_080459600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OG1; OPR3; OPR7; OPR13; OsOPR7; OsJ_27573; P0690E03.3
    Expression
    Broad expression in roots before flowering (RPKM 127.0), leaves after flowering (RPKM 57.8) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22686142..22689685)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22547188..22550712)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345760 Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC4345761 Neighboring gene germin-like protein 8-13 Neighboring gene germin-like protein 8-14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 12-oxophytodienoate reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in jasmonic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oxylipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    12-oxophytodienoate reductase 7
    Names
    12-oxophytodienoate-10,11-reductase 7
    LOC_Os08g35740
    OPDA-reductase 7
    P0493A04.35
    Protein OPEN GLUME 1
    putative 12-oxophytodienoate reductase
    NP_001409514.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422585.1 → NP_001409514.1  12-oxophytodienoate reductase 7

      Status: VALIDATED

      Source sequence(s)
      AK071203, CB651182
      UniProtKB/Swiss-Prot
      A0A0P0XGE5, Q6Z965
      UniProtKB/TrEMBL
      A2YVX7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22686142..22689685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z965.1 GenPept UniProtKB/Swiss-Prot:Q6Z965

    Gene LinkOut

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    Research Materials