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    LOC4351573 probable serine/threonine-protein kinase WNK9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351573, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351573
    Gene description
    probable serine/threonine-protein kinase WNK9
    Locus tag
    OSNPB_120162100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WNK9; OsWNK9
    Expression
    Ubiquitous expression in roots before flowering (RPKM 72.5), flower buds (RPKM 38.7) and 6 other tissues See more
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    Genomic context

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    See LOC4351573 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3155787..3159196, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3128709..3131902, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351571 Neighboring gene ASI1-immunoprecipitated protein 2 Neighboring gene calcineurin B-like protein 6 Neighboring gene transcription factor VIP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress. Manuka R, et al. Plant Sci, 2018 May. PMID 29576087
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results indicated that OsWNK9 may regulate salt and drought response in Abscisic Acid (ABA) dependent manner.
      Title: Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase WNK9
    Names
    LOC_Os12g06490
    Protein kinase with no lysine 9
    NP_001410261.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423332.1 → NP_001410261.1  probable serine/threonine-protein kinase WNK9

      Status: VALIDATED

      Source sequence(s)
      AK073772, CI552162, CI640850
      UniProtKB/Swiss-Prot
      B7EMN3, Q2QXC6
      UniProtKB/TrEMBL
      A0A2L2FQE8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3155787..3159196 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QXC6.1 GenPept UniProtKB/Swiss-Prot:Q2QXC6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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