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    LOC4341223 uncharacterized LOC4341223 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341223, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341223
    Gene description
    uncharacterized LOC4341223
    Locus tag
    OSNPB_060538900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1018E06.5
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21080343..21081122, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20223904..20224790, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341221 Neighboring gene small ribosomal subunit protein uS10m Neighboring gene uncharacterized LOC136357134 Neighboring gene cationic amino acid transporter 8, vacuolar

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341223
    Names
    Os06g0538900
    P0551A03.47
    putative susceptibility homeodomain transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21080343..21081122 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785704.2 → XP_015641190.1  uncharacterized protein LOC4341223

      UniProtKB/TrEMBL
      A0A0P0WXJ2, A3BCG9, B7E931, Q5Z6T5
      Conserved Domains (1) summary
      pfam04398
      Location:46 → 139
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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