U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4336294 S-adenosylmethionine decarboxylase proenzyme-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336294, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4336294
    Gene description
    S-adenosylmethionine decarboxylase proenzyme-like
    Locus tag
    OSNPB_040498600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAMDC; AdoMetDC; OsJ_004076
    Expression
    Ubiquitous expression in flower buds (RPKM 547.5), mature seeds (RPKM 512.0) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4336294 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25412384..25415475)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24915029..24918140)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6b-2 Neighboring gene uncharacterized LOC9267297 Neighboring gene peroxidase 18 Neighboring gene cell division control protein 48 homolog B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenosylmethionine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in spermine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    S-adenosylmethionine decarboxylase proenzyme
    Names
    LOC_Os04g42090
    OSJNBa0029H02.4
    OSJNBa0067K08.23
    NP_001389314.1
    NP_001389315.1
    NP_001389316.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402385.1NP_001389314.1  S-adenosylmethionine decarboxylase proenzyme

      Status: VALIDATED

      Source sequence(s)
      CF280389, CI568111, Y07766
      UniProtKB/Swiss-Prot
      A2XV58, A2ZZV4, O24215, O81269, Q0JC10, Q56CX9, Q7XU78, Q7XUL0, Q9SC65
      UniProtKB/TrEMBL
      B7ED49
    2. NM_001402386.1NP_001389315.1  S-adenosylmethionine decarboxylase proenzyme

      Status: VALIDATED

      Source sequence(s)
      CF280389, CI745086, Y07766
      UniProtKB/Swiss-Prot
      A2XV58, A2ZZV4, O24215, O81269, Q0JC10, Q56CX9, Q7XU78, Q7XUL0, Q9SC65
      UniProtKB/TrEMBL
      B7ED49
    3. NM_001402387.1NP_001389316.1  S-adenosylmethionine decarboxylase proenzyme

      Status: VALIDATED

      Source sequence(s)
      AP014960, CB668481, CF280389, CI579151, Y07766
      UniProtKB/Swiss-Prot
      A2XV58, A2ZZV4, O24215, O81269, Q0JC10, Q56CX9, Q7XU78, Q7XUL0, Q9SC65
      UniProtKB/TrEMBL
      B7ED49

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25412384..25415475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)