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    LOC4326409 metallothionein-like protein 2B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326409, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326409
    Gene description
    metallothionein-like protein 2B
    Locus tag
    OSNPB_010974200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MT2B; RICMT; OsMT2c; OsJ_04949; OsMT-I-2b
    Expression
    Broad expression in flowers (RPKM 1148.6), flower buds (RPKM 929.1) and 5 other tissues See more
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    Genomic context

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    See LOC4326409 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43700203..43700904)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (43046960..43047878)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic Neighboring gene outer envelope pore protein 16, chloroplastic Neighboring gene uncharacterized LOC4324294 Neighboring gene probable E3 ubiquitin-protein ligase XBOS31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. H₂O₂ Is Involved in the Metallothionein-Mediated Rice Tolerance to Copper and Cadmium Toxicity. Zhang H, et al. Int J Mol Sci, 2017 Oct 1. PMID 28974021, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metallothionein-like protein 2B
    Names
    Class I metallothionein-like protein 2B
    LOC_Os01g74300
    P0459B04.7-1
    P0459B04.7-2
    P0698H10.31-1
    P0698H10.31-2
    metallothione like protein 2B
    metallothionein
    metallothionein 2c
    putative metallothionein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397951.1 → NP_001384880.1  metallothionein-like protein 2B

      Status: VALIDATED

      Source sequence(s)
      AK062796, AU031241
      UniProtKB/Swiss-Prot
      A3A210, O04107, Q5JM82
      UniProtKB/TrEMBL
      A0A481P821, A2WZM5, I3QD70

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43700203..43700904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JM82.1 GenPept UniProtKB/Swiss-Prot:Q5JM82

    Gene LinkOut

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