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    LOC4351810 outer envelope pore protein 37, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351810, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351810
    Gene description
    outer envelope pore protein 37, chloroplastic
    Locus tag
    OSNPB_120225200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 20.8), leaves before flowering (RPKM 19.5) and 6 other tissues See more
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    Genomic context

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    See LOC4351810 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (6849357..6853412)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (6811133..6815177)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354841 Neighboring gene la-related protein 6B Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene uncharacterized LOC107279601

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    outer envelope pore protein 37, chloroplastic
    Names
    Os12g0225200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      6849357..6853412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764860.3 → XP_015620346.1  outer envelope pore protein 37, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A2ZJ46

    2. XM_015764861.3 → XP_015620347.1  outer envelope pore protein 37, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A2ZJ46, Q0IPC0, Q2QVL8
    Nucleotide Protein
    Heading Accession and Version

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