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    LOC4323992 uncharacterized LOC4323992 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323992, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323992
    Gene description
    uncharacterized LOC4323992
    Locus tag
    OSNPB_010514300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1075D06.2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 14.9), leaves before flowering (RPKM 11.9) and 6 other tissues See more
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    Genomic context

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    See LOC4323992 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (18729937..18739780)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18163727..18173596)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-7A Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like Neighboring gene fimbrin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular cholesterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4323992
    Names
    HEAT repeat-containing protein-like
    Os01g0514300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      18729937..18739780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766183.3 → XP_015621669.1  uncharacterized protein LOC4323992

      UniProtKB/TrEMBL
      A0A0P0V3B1, B9EX73, Q5QMW8
      Conserved Domains (2) summary
      COG1196
      Location:80 → 312
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00044
      Location:943 → 973
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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