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    LOC4328430 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328430, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328430
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11
    Locus tag
    OSNPB_020168600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328430 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3715019..3718931, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3705909..3709899, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative E3 ubiquitin-protein ligase LIN-1 Neighboring gene O-fucosyltransferase 23 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic Neighboring gene porphobilinogen deaminase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11
    Names
    Os02g0168600
    P0669G09.12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3715019..3718931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770856.3 → XP_015626342.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11

      UniProtKB/TrEMBL
      B8AIH9, B9F392, Q6H6D4
      Conserved Domains (1) summary
      cl19932
      Location:92 → 176
      OTU; OTU-like cysteine protease

    2. XM_015770855.3 → XP_015626341.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11

      UniProtKB/TrEMBL
      B8AIH9, B9F392, Q6H6D4
      Conserved Domains (1) summary
      cl19932
      Location:92 → 176
      OTU; OTU-like cysteine protease

    3. XM_015770853.3 → XP_015626339.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11

      UniProtKB/TrEMBL
      B8AIH9, B9F392, Q6H6D4
      Conserved Domains (1) summary
      cl19932
      Location:92 → 176
      OTU; OTU-like cysteine protease

    4. XM_015770854.3 → XP_015626340.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11

      UniProtKB/TrEMBL
      B8AIH9, B9F392, Q6H6D4
      Conserved Domains (1) summary
      cl19932
      Location:92 → 176
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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