U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4344399 two-component response regulator-like PRR37 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344399, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4344399
    Gene description
    two-component response regulator-like PRR37
    Locus tag
    OSNPB_070695100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HD2; DTH7; PRR37; OsPRR37
    Expression
    Broad expression in leaves before flowering (RPKM 55.7), roots after flowering (RPKM 47.0) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4344399 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29851118..29863628)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29616704..29629187)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein RETARDED ROOT GROWTH, mitochondrial Neighboring gene uncharacterized LOC136357469 Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene protein NETWORKED 2D

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice. Liu C, et al. Plant Cell Environ, 2018 Mar. PMID 29314052
    2. OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice. Liu C, et al. Sci Rep, 2015 Aug 4. PMID 26238949, Free PMC Article
    3. Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Murakami M, et al. Biosci Biotechnol Biochem, 2005 Feb. PMID 15725670
    4. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
    5. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsPRR37 is a circadian clock gene.OsPRR37 regulates rice flowering time.
      Title: OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice.
    2. Two general combining ability loci associate with PRR37 and Ghd7.
      Title: OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    two-component response regulator-like PRR37
    Names
    LOC_Os07g49460
    P0627E10.21
    protein DAYS TO HEADING 7
    protein HEADING DATE 2
    pseudo-response regulator 37
    putative pseudo-response regulator

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403302.1 → NP_001390231.1  two-component response regulator-like PRR37

      Status: VALIDATED

      Source sequence(s)
      AK059514, AK066112, CB683386, CI586284, CI598183
      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    2. NM_001403303.1 → NP_001390232.1  two-component response regulator-like PRR37

      Status: VALIDATED

      Source sequence(s)
      AK059514, AK066112, CB683386
      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    3. NM_001403304.1 → NP_001390233.1  two-component response regulator-like PRR37

      Status: VALIDATED

      Source sequence(s)
      AK059514, AK066112, CB683386, CI580217
      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29851118..29863628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791122.3 → XP_015646608.1  two-component response regulator-like PRR37 isoform X2

      UniProtKB/TrEMBL
      A0A076PUC2
      Conserved Domains (2) summary
      cd00156
      Location:65 → 180
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:680 → 722
      CCT; CCT motif

    2. XM_066312015.1 → XP_066168112.1  two-component response regulator-like PRR37 isoform X2

    3. XM_066312012.1 → XP_066168109.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    4. XM_066312021.1 → XP_066168118.1  two-component response regulator-like PRR37 isoform X3

    5. XM_015791118.3 → XP_015646604.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
      UniProtKB/TrEMBL
      A0A076PUC2
      Conserved Domains (2) summary
      cd00156
      Location:65 → 180
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:682 → 724
      CCT; CCT motif

    6. XM_066312020.1 → XP_066168117.1  two-component response regulator-like PRR37 isoform X2

    7. XM_015791117.3 → XP_015646603.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
      UniProtKB/TrEMBL
      A0A076PUC2
      Conserved Domains (2) summary
      cd00156
      Location:65 → 180
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:682 → 724
      CCT; CCT motif

    8. XM_066312016.1 → XP_066168113.1  two-component response regulator-like PRR37 isoform X2

    9. XM_066312013.1 → XP_066168110.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    10. XM_066312022.1 → XP_066168119.1  two-component response regulator-like PRR37 isoform X3

    11. XM_015791119.3 → XP_015646605.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
      UniProtKB/TrEMBL
      A0A076PUC2
      Conserved Domains (2) summary
      cd00156
      Location:65 → 180
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:682 → 724
      CCT; CCT motif

    12. XM_066312017.1 → XP_066168114.1  two-component response regulator-like PRR37 isoform X2

    13. XM_066312018.1 → XP_066168115.1  two-component response regulator-like PRR37 isoform X2

    14. XM_066312014.1 → XP_066168111.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9

    15. XM_066312023.1 → XP_066168120.1  two-component response regulator-like PRR37 isoform X3

    16. XM_015791121.3 → XP_015646607.1  two-component response regulator-like PRR37 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XAZ4, Q0D3B6, Q689G8, Q6UV11, Q6Z3X9
      UniProtKB/TrEMBL
      A0A076PUC2
      Conserved Domains (2) summary
      cd00156
      Location:65 → 180
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:682 → 724
      CCT; CCT motif

    17. XM_066312019.1 → XP_066168116.1  two-component response regulator-like PRR37 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D3B6.1 GenPept UniProtKB/Swiss-Prot:Q0D3B6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials