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    LOC4348544 putative disease resistance protein RGA3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348544, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4348544
    Gene description
    putative disease resistance protein RGA3
    Locus tag
    OSNPB_100394400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 4.1), flowers (RPKM 4.0) and 6 other tissues See more
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    Genomic context

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    See LOC4348544 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13823055..13835343)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13171237..13183588)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene shewanella-like protein phosphatase 1 Neighboring gene subtilisin-like protease SBT1.8 Neighboring gene uncharacterized LOC9266805 Neighboring gene uncharacterized LOC107279087 Neighboring gene serine/threonine-protein kinase RIPK

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance RPP13-like protein 1; putative disease resistance protein RGA3
    Names
    Os10g0394400

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      13823055..13835343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305029.1 → XP_066161126.1  putative disease resistance protein RGA3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XTQ5

    2. XM_015759327.3 → XP_015614813.2  putative disease resistance protein RGA3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XTQ5

    3. XM_066305027.1 → XP_066161124.1  putative disease resistance RPP13-like protein 1 isoform X1

      UniProtKB/TrEMBL
      Q0IXW4, Q109R2

    4. XM_066305028.1 → XP_066161125.1  putative disease resistance protein RGA3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XTQ5

    5. XM_066305030.1 → XP_066161127.1  putative disease resistance protein RGA3 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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