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    LOC4338672 carbon catabolite repressor protein 4 homolog 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338672, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338672
    Gene description
    carbon catabolite repressor protein 4 homolog 4
    Locus tag
    OSNPB_050389500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 25.3), roots after flowering (RPKM 21.4) and 6 other tissues See more
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    Genomic context

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    See LOC4338672 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18947478..18951394, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18845941..18849966, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene sm-like protein LSM5 Neighboring gene probable folate-biopterin transporter 7 Neighboring gene E3 ubiquitin-protein ligase RLIM Neighboring gene cyclin-dependent kinase C-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbon catabolite repressor protein 4 homolog 4
    Names
    Os05g0389500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18947478..18951394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784693.3 → XP_015640179.1  carbon catabolite repressor protein 4 homolog 4

      UniProtKB/TrEMBL
      B8AY28, B9FPE1, Q0DIH5, Q6I5Y3
      Conserved Domains (1) summary
      cl00490
      Location:68 → 384
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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