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    LOC4329959 hydroxycinnamoyltransferase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329959, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329959
    Gene description
    hydroxycinnamoyltransferase 2-like
    Locus tag
    OSNPB_020611800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HCT2; OsHCT2; OJ1004_A05.15
    Expression
    Broad expression in roots before flowering (RPKM 222.3), leaves after flowering (RPKM 78.0) and 4 other tissues See more
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    Genomic context

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    See LOC4329959 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24563432..24567348)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24080659..24084617)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene enhancer of rudimentary homolog Neighboring gene eukaryotic translation initiation factor-like Neighboring gene uncharacterized LOC4329960 Neighboring gene phosphatidyl-N-methylethanolamine N-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxycinnamoyltransferase 2
    Names
    BAHD-like hydroxycinnamoyl transferase HCT2
    Hydroxycinnamoyltransferase 2
    LOC_Os02g39850
    Os02g0611800
    putative hydroxyanthranilate hydroxycinnamoyltransferase 3
    shikimate O-hydroxycinnamoyltransferase
    NP_001403641.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416712.1 → NP_001403641.1  hydroxycinnamoyltransferase 2

      Status: VALIDATED

      Source sequence(s)
      CB663173, CB663858, CB668041, CI193771, CI580528
      UniProtKB/Swiss-Prot
      Q6K638
      UniProtKB/TrEMBL
      A2X747

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24563432..24567348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K638.1 GenPept UniProtKB/Swiss-Prot:Q6K638

    Gene LinkOut

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    Research Materials