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    LOC4332840 probable nucleolar protein 5-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332840, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332840
    Gene description
    probable nucleolar protein 5-2
    Locus tag
    OSNPB_030350100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip101
    Expression
    Ubiquitous expression in flower buds (RPKM 83.2), mature seeds (RPKM 76.1) and 6 other tissues See more
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    Genomic context

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    See LOC4332840 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13182044..13186050, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13126153..13130235, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene uncharacterized LOC9271082 Neighboring gene probable nucleolar protein 5-2 Neighboring gene uncharacterized LOC136355578

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable nucleolar protein 5-2
    Names
    BRI1-KD interacting protein 101
    Os03g0350100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13182044..13186050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775273.3 → XP_015630759.1  probable nucleolar protein 5-2

      UniProtKB/TrEMBL
      A0A0P0VY93, A2XGN8, Q0DRW2, Q10LH5
      Conserved Domains (2) summary
      COG1498
      Location:43 → 442
      SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
      pfam08156
      Location:2 → 66
      NOP5NT; NOP5NT (NUC127) domain

    2. XM_015775272.3 → XP_015630758.1  probable nucleolar protein 5-2

      UniProtKB/TrEMBL
      A0A0P0VY93, A2XGN8, Q0DRW2, Q10LH5
      Conserved Domains (2) summary
      COG1498
      Location:43 → 442
      SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
      pfam08156
      Location:2 → 66
      NOP5NT; NOP5NT (NUC127) domain
    Nucleotide Protein
    Heading Accession and Version

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