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    LOC4336649 thioredoxin-like 3-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336649, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336649
    Gene description
    thioredoxin-like 3-3
    Locus tag
    OSNPB_040560200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_15765
    Expression
    Ubiquitous expression in mature seeds (RPKM 12.4), flower buds (RPKM 11.5) and 6 other tissues See more
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    Genomic context

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    See LOC4336649 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28570375..28572271)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28064997..28066977)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable aquaporin PIP1-2 Neighboring gene mitogen-activated protein kinase kinase kinase YODA Neighboring gene cytochrome P450 86A8 Neighboring gene Flavin-containing amine oxidase domain-containing protein 3 Neighboring gene Alpha-L-fucosidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thioredoxin-like 3-3
    Names
    LOC_Os04g47260
    OSJNBa0084K11.5
    Thioredoxin-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419754.1 → NP_001406683.1  thioredoxin-like 3-3

      Status: VALIDATED

      Source sequence(s)
      CF281405, CF281406, CV724947, CV724948
      UniProtKB/Swiss-Prot
      A0A0P0WDF0, Q0JB29, Q7XSQ7
      UniProtKB/TrEMBL
      B8ASX2, Q01H91

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28570375..28572271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XSQ7.2 GenPept UniProtKB/Swiss-Prot:Q7XSQ7

    Gene LinkOut

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