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    LOC4347149 phospholipase SGR2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347149, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347149
    Gene description
    phospholipase SGR2
    Locus tag
    OSNPB_090436400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 20.2), roots after flowering (RPKM 20.1) and 6 other tissues See more
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    Genomic context

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    See LOC4347149 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20444564..20453592)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16049143..16074054)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative protease Do-like 14 Neighboring gene uncharacterized LOC136351939 Neighboring gene uncharacterized LOC4347150 Neighboring gene uncharacterized LOC4347151

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase SGR2
    Names
    Os09g0436400
    Os09g0436500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20444564..20453592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304408.1 → XP_066160505.1  phospholipase SGR2

    2. XM_066304409.1 → XP_066160506.1  phospholipase SGR2

    RNA

    1. XR_010735250.1 RNA Sequence

    2. XR_010735245.1 RNA Sequence

    3. XR_010735249.1 RNA Sequence

    4. XR_010735251.1 RNA Sequence

    5. XR_010735246.1 RNA Sequence

    6. XR_010735247.1 RNA Sequence

    7. XR_010735253.1 RNA Sequence

    8. XR_010735232.1 RNA Sequence

    9. XR_010735241.1 RNA Sequence

    10. XR_010735243.1 RNA Sequence

    11. XR_010735233.1 RNA Sequence

    12. XR_010735244.1 RNA Sequence

    13. XR_010735236.1 RNA Sequence

    14. XR_010735231.1 RNA Sequence

    15. XR_010735234.1 RNA Sequence

    16. XR_010735237.1 RNA Sequence

    17. XR_010735238.1 RNA Sequence

    18. XR_010735240.1 RNA Sequence

    19. XR_010735242.1 RNA Sequence

    20. XR_010735254.1 RNA Sequence

    21. XR_010735252.1 RNA Sequence

    22. XR_010735255.1 RNA Sequence

    23. XR_010735256.1 RNA Sequence

    24. XR_010735258.1 RNA Sequence

    25. XR_010735257.1 RNA Sequence

    26. XR_010735239.1 RNA Sequence

    27. XR_010735260.1 RNA Sequence

    28. XR_010735261.1 RNA Sequence

    29. XR_010735235.1 RNA Sequence

    30. XR_010735248.1 RNA Sequence

    31. XR_010735259.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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