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    LOC4344436 uncharacterized LOC4344436 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344436, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344436
    Gene description
    uncharacterized LOC4344436
    Locus tag
    OSNPB_080104100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 32.5), roots after flowering (RPKM 25.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (227269..230041, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (222483..225357, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351368 Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene NAC domain-containing protein 105 Neighboring gene receptor homology region, transmembrane domain- and RING domain-containing protein 2-like Neighboring gene uncharacterized LOC4344438

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344436
    Names
    Os08g0104100
    P0015C07.37-1
    transmembrane protein 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      227269..230041 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792817.3 → XP_015648303.1  uncharacterized protein LOC4344436

      UniProtKB/TrEMBL
      A2YQD4, A3BNU6, Q69U50
      Conserved Domains (1) summary
      pfam14770
      Location:56 → 173
      TMEM18; Transmembrane protein 18
    Nucleotide Protein
    Heading Accession and Version

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