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    LOC4350208 probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350208, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350208
    Gene description
    probably inactive leucine-rich repeat receptor-like protein kinase At5g48380
    Locus tag
    OSNPB_110249900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350208 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8528840..8532547)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (8095785..8099539)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase Neighboring gene polygalacturonase Neighboring gene heterogeneous nuclear ribonucleoprotein Q Neighboring gene uncharacterized LOC136353923 Neighboring gene uncharacterized LOC9271305

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probably inactive leucine-rich repeat receptor-like protein kinase At5g48380
    Names
    Os11g0249900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8528840..8532547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762076.3 → XP_015617562.1  probably inactive leucine-rich repeat receptor-like protein kinase At5g48380

      UniProtKB/TrEMBL
      A3CA80, Q2R7Z5, Q53JL7
      Conserved Domains (3) summary
      PLN03150
      Location:24 → 247
      PLN03150; hypothetical protein; Provisional
      cd14066
      Location:302 → 571
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:123 → 146
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015762077.3 → XP_015617563.1  probably inactive leucine-rich repeat receptor-like protein kinase At5g48380

      UniProtKB/TrEMBL
      A3CA80, Q2R7Z5, Q53JL7
      Conserved Domains (3) summary
      PLN03150
      Location:24 → 247
      PLN03150; hypothetical protein; Provisional
      cd14066
      Location:302 → 571
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:123 → 146
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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