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    LOC4328444 nuclear transcription factor Y subunit C-4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328444, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328444
    Gene description
    nuclear transcription factor Y subunit C-4-like
    Locus tag
    OSNPB_020170500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsHAP5A; OJ1116_A06.31
    Expression
    Ubiquitous expression in roots before flowering (RPKM 30.2), roots after flowering (RPKM 27.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3855254..3859181, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3846180..3850134, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 29-like Neighboring gene uncharacterized LOC107280111 Neighboring gene uncharacterized LOC9267856 Neighboring gene uncharacterized LOC4328445

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit C-4-like
    Names
    HAP5 subunit of HAP complex
    Os02g0170500
    P0030G02.21
    nuclear transcription factor Y subunit gamma
    putative heme activated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3855254..3859181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772034.3 → XP_015627520.1  nuclear transcription factor Y subunit C-4-like

      UniProtKB/TrEMBL
      A0A5S6RAS8, A2X1E4, A3A3L3, Q0E3J5, Q6H707
      Conserved Domains (1) summary
      COG5208
      Location:84 → 184
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. XM_015772036.3 → XP_015627522.1  nuclear transcription factor Y subunit C-4-like

      UniProtKB/TrEMBL
      A0A5S6RAS8, A2X1E4, A3A3L3, Q0E3J5, Q6H707
      Conserved Domains (1) summary
      COG5208
      Location:84 → 184
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    3. XM_066307491.1 → XP_066163588.1  nuclear transcription factor Y subunit C-4-like

      UniProtKB/TrEMBL
      A0A5S6RAS8, A2X1E4, A3A3L3, Q0E3J5, Q6H707

    4. XM_066307492.1 → XP_066163589.1  nuclear transcription factor Y subunit C-4-like

      UniProtKB/TrEMBL
      A0A5S6RAS8, A2X1E4, A3A3L3, Q0E3J5, Q6H707
    Nucleotide Protein
    Heading Accession and Version

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