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    LOC4338946 uncharacterized LOC4338946 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338946, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338946
    Gene description
    uncharacterized LOC4338946
    Locus tag
    OSNPB_050446900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 5.6), milk grains (RPKM 4.7) and 6 other tissues See more
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    Genomic context

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    See LOC4338946 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22026546..22029051, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21914794..21917799, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein ROS1C-like Neighboring gene arginyl-tRNA--protein transferase 2 Neighboring gene uncharacterized LOC136356569 Neighboring gene pleckstrin homology domain-containing protein 1 Neighboring gene auxin transporter-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338946
    Names
    Os05g0446900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22026546..22029051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310968.1 → XP_066167065.1  uncharacterized protein LOC4338946 isoform X4

    2. XM_015782503.3 → XP_015637989.1  uncharacterized protein LOC4338946 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KKV7, B8AYR6, Q688J4
      Conserved Domains (1) summary
      cd05467
      Location:101 → 194
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

    3. XM_015782504.3 → XP_015637990.1  uncharacterized protein LOC4338946 isoform X3

      Conserved Domains (1) summary
      cd05467
      Location:115 → 208
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

    4. XM_015782502.3 → XP_015637988.1  uncharacterized protein LOC4338946 isoform X1

      UniProtKB/TrEMBL
      B8AYR6
      Conserved Domains (1) summary
      cd05467
      Location:115 → 208
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
    Nucleotide Protein
    Heading Accession and Version

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