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    LOC4344587 protein LOL4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344587, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344587
    Gene description
    protein LOL4-like
    Locus tag
    OSNPB_080130100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOL4; OsLOL4; OsJ_25929
    Expression
    Broad expression in roots before flowering (RPKM 8.2), flowers (RPKM 3.6) and 5 other tissues See more
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    Genomic context

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    See LOC4344587 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1697740..1700293, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1686251..1688922, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266083 Neighboring gene uncharacterized LOC4344586 Neighboring gene uncharacterized LOC136351285 Neighboring gene uncharacterized LOC4344588

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation. Wang L, et al. Mol Plant Microbe Interact, 2005 May. PMID 15915636
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The sequencing and physiological functions of OsLSD1 are reported.
      Title: OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LOL4
    Names
    LOC_Os08g03610
    P0582D05.124
    Protein LSD ONE LIKE 4
    Putative zinc finger LOL4
    putative zinc-finger protein Lsd1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422892.1 → NP_001409821.1  protein LOL4

      Status: VALIDATED

      Source sequence(s)
      AU033018, CI208779, CI576565
      UniProtKB/Swiss-Prot
      A0A0P0XBE6, Q84UR0
      UniProtKB/TrEMBL
      B8BAG4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1697740..1700293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84UR0.1 GenPept UniProtKB/Swiss-Prot:Q84UR0

    Gene LinkOut

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