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    LOC4334654 G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334654, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334654
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3
    Locus tag
    OSNPB_030828800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334654 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35781650..35785962)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34808926..34813298)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene mannan endo-1,4-beta-mannosidase 4-like Neighboring gene cation/H(+) antiporter 19 Neighboring gene NAC domain-containing protein 72-like Neighboring gene probable acylpyruvase FAHD2, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3; G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4
    Names
    G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
    Os03g0828800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35781650..35785962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308619.1 → XP_066164716.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 isoform X1

    2. XM_066308620.1 → XP_066164717.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X3

    3. XM_015773190.3 → XP_015628676.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RD59, A3APA2, Q10B65, Q8SAY5
      Conserved Domains (2) summary
      cl21453
      Location:578 → 838
      PKc_like; Protein Kinases, catalytic domain
      cl24013
      Location:135 → 222
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...

    4. XM_015773193.3 → XP_015628679.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X3

      Conserved Domains (1) summary
      cl21453
      Location:39 → 299
      PKc_like; Protein Kinases, catalytic domain

    5. XM_015773188.3 → XP_015628674.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RD59, A3APA2, Q10B65, Q8SAY5
      Conserved Domains (2) summary
      cl21453
      Location:578 → 838
      PKc_like; Protein Kinases, catalytic domain
      cl24013
      Location:135 → 222
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...

    6. XM_015773192.3 → XP_015628678.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X3

      Conserved Domains (1) summary
      cl21453
      Location:39 → 299
      PKc_like; Protein Kinases, catalytic domain

    7. XM_015773191.3 → XP_015628677.1  G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X2

      UniProtKB/TrEMBL
      A0A5S6RD59, A3APA2, Q10B65, Q8SAY5
      Conserved Domains (1) summary
      cl21453
      Location:386 → 646
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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