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    MYBS2 transcription factor MYBS2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349391, updated on 17-Jul-2024

    Summary

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    Gene symbol
    MYBS2
    Gene description
    transcription factor MYBS2-like
    Locus tag
    OSNPB_100562100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMYBS2; OsJ_32468
    Expression
    Ubiquitous expression in flower buds (RPKM 43.9), flowers (RPKM 42.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22866737..22868815, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22174711..22176695, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerophosphate phosphatase PTPMT1 Neighboring gene cell wall protein RBR3 Neighboring gene phospholipase A1-Ibeta2, chloroplastic Neighboring gene serine/threonine-protein kinase D6PK Neighboring gene protein BRANCHLESS TRICHOME

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice. Chen YS, et al. Proc Natl Acad Sci U S A, 2019 Oct 22. PMID 31594849, Free PMC Article
    2. Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression. Lu CA, et al. Plant Cell, 2002 Aug. PMID 12172034, Free PMC Article
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to gibberellin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYBS2
    Names
    OSJNBb0089A17.5
    OSNPB_100562100
    Os10g0562100
    myb-related protein S2
    transcription factor MYB1R1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404357.1 → NP_001391286.1  transcription factor MYBS2

      Status: VALIDATED

      Source sequence(s)
      AK121235, CB684530, CI073977, CI151308, CI308780, CI595671
      UniProtKB/Swiss-Prot
      B8BI93, Q7XC51, Q8H1D1, Q9AUS7
      UniProtKB/TrEMBL
      Q336S4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22866737..22868815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XC51.1 GenPept UniProtKB/Swiss-Prot:Q7XC51

    Gene LinkOut

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