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    LOC4329690 glyoxylate/succinic semialdehyde reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329690, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4329690
    Gene description
    glyoxylate/succinic semialdehyde reductase 1
    Locus tag
    OSNPB_020562700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1712_E04.5
    Expression
    Ubiquitous expression in flower buds (RPKM 70.2), leaves before flowering (RPKM 55.8) and 5 other tissues See more
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    Genomic context

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    See LOC4329690 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21344267..21348527)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene MLO-like protein 1 Neighboring gene F-box/kelch-repeat protein SKIP20 Neighboring gene uncharacterized LOC112937887

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxybutyrate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxylate/succinic semialdehyde reductase 1
    Names
    Os02g0562700
    gamma hydroxybutyrate dehydrogenase-like protein
    putative gamma hydroxybutyrate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21344267..21348527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767691.1 → XP_015623177.1  glyoxylate/succinic semialdehyde reductase 1

      UniProtKB/TrEMBL
      B8ADY7, Q0E0C0, Q6ZGB8, Q84VC8
      Conserved Domains (1) summary
      COG2084
      Location:1 → 285
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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