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    LOC4351194 xylanase inhibitor protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351194, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351194
    Gene description
    xylanase inhibitor protein 1-like
    Locus tag
    OSNPB_110701800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RIXI; XIP-I; Chib3H-a; OsJ_34838; chitinase
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (30807702..30808959)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28753715..28755108)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene xylanase inhibitor protein 2-like Neighboring gene xylanase inhibitor protein 2-like Neighboring gene xylanase inhibitor protein 1-like Neighboring gene xylanase inhibitor protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice class III chitinase homologues isolated by random cloning of rice cDNAs. Nagasaki H, et al. DNA Res, 1997 Dec 31. PMID 9501993
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xylanase inhibitor protein 1
    Names
    Class III chitinase homolog a
    LOC_Os11g47580
    class III chitinase homologue (OsChib3H-a)H-

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404595.1 → NP_001391524.1  xylanase inhibitor protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AU092193, CB646357, CF329182, CI073262
      UniProtKB/Swiss-Prot
      A0A0P0Y5K7, A0A218MG79, O49828, Q2QZ60, Q7GCM7
      UniProtKB/TrEMBL
      A2ZGZ5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      30807702..30808959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7GCM7.1 GenPept UniProtKB/Swiss-Prot:Q7GCM7

    Gene LinkOut

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