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    LOC4334102 myosin-12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334102, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334102
    Gene description
    myosin-12
    Locus tag
    OSNPB_030747900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MyoXIE1; MyoXIE2; MyoXIE3
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    Genomic context

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    See LOC4334102 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31647055..31656716)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30764198..30774111)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355620 Neighboring gene photosystem II D1 precursor processing protein PSB27-H2, chloroplastic Neighboring gene cysteine synthase-like Neighboring gene YTH domain-containing protein ECT4 Neighboring gene NADPH-dependent aldehyde reductase-like protein, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and molecular characterization of myosin gene family in Oryza sativa genome. Jiang S, et al. Plant Cell Physiol, 2004 May. PMID 15169941
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microfilament motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle transport along actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myosin-12
    Names
    Os03g0747900
    myosin heavy chain class XI E1 protein
    myosin heavy chain class XI E2 protein
    myosin heavy chain class XI E3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31647055..31656716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777473.3 → XP_015632959.1  myosin-12 isoform X1

      UniProtKB/TrEMBL
      Q8W312
      Conserved Domains (5) summary
      COG1196
      Location:851 → 1076
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd15475
      Location:1136 → 1522
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam17380
      Location:722 → 955
      DUF5401; Family of unknown function (DUF5401)
      pfam02736
      Location:10 → 46
      Myosin_N; Myosin N-terminal SH3-like domain

    2. XM_015777474.3 → XP_015632960.1  myosin-12 isoform X2

      UniProtKB/TrEMBL
      Q8W312
      Conserved Domains (2) summary
      COG5022
      Location:9 → 1460
      COG5022; Myosin heavy chain [General function prediction only]
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain

    3. XM_066308432.1 → XP_066164529.1  myosin-12 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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