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    LOC4328520 homeobox protein knotted-1-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328520, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328520
    Gene description
    homeobox protein knotted-1-like 2
    Locus tag
    OSNPB_020182800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HOS58
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 99.3), leaves after flowering (RPKM 89.3) and 6 other tissues See more
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    Genomic context

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    See LOC4328520 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4634990..4638430)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4625402..4628857)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At1g80640 Neighboring gene uncharacterized LOC4328519 Neighboring gene uncharacterized LOC9267286 Neighboring gene BRCA1-associated protein Neighboring gene uncharacterized LOC9272403 Neighboring gene protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice. Ito Y, et al. Gene, 2002 Apr 17. PMID 12034492
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein knotted-1-like 2
    Names
    Homeobox protein HOS58
    KNOX family class 2 homeodomain protein
    LOC_Os02g08544

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409362.1 → NP_001396291.1  homeobox protein knotted-1-like 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK243352, CB667102, CF569139, CI304983, CI424644
      UniProtKB/Swiss-Prot
      B7FAA7, Q0E3C3, Q94LW5, Q9SXM9
      UniProtKB/TrEMBL
      A3A3U6

    2. NM_001409363.1 → NP_001396292.1  homeobox protein knotted-1-like 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK243352, CB667102, CF569139, CI131445, CI304983
      UniProtKB/TrEMBL
      A3A3U6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4634990..4638430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E3C3.2 GenPept UniProtKB/Swiss-Prot:Q0E3C3

    Gene LinkOut

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