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    LOC9269929 endonuclease 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269929, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269929
    Gene description
    endonuclease 1
    Locus tag
    OSNPB_040636400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 8.7), flowers (RPKM 3.6) and 5 other tissues See more
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    Genomic context

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    See LOC9269929 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32870597..32872706)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32362897..32365039)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337140 Neighboring gene uncharacterized LOC112938669 Neighboring gene uncharacterized LOC9267409 Neighboring gene BTB/POZ domain-containing protein At5g03250 Neighboring gene MICOS complex subunit MIC60, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endonuclease 1
    Names
    Os04g0636400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32870597..32872706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024740.2 → XP_025880525.1  endonuclease 1

      UniProtKB/TrEMBL
      A0A0N7KJS3, A0A8J8XMW8, B8AV91, B9FCR3, Q25A98
      Conserved Domains (1) summary
      pfam02265
      Location:30 → 295
      S1-P1_nuclease; S1/P1 Nuclease
    Nucleotide Protein
    Heading Accession and Version

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