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    LOC4341964 glycosyltransferase BC10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341964, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4341964
    Gene description
    glycosyltransferase BC10-like
    Locus tag
    OSNPB_060700500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 24.6), flowers (RPKM 20.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30329236..30333943, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29462300..29467379, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341963 Neighboring gene uncharacterized LOC136356791 Neighboring gene cadmium/zinc-transporting ATPase HMA2-like Neighboring gene eukaryotic initiation factor 4A-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycosyltransferase BC10-like
    Names
    Os06g0700500
    P0468G03.24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30329236..30333943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311689.1 → XP_066167786.1  glycosyltransferase BC10-like isoform X2

      UniProtKB/TrEMBL
      B7EKK3

    2. XM_015785404.3 → XP_015640890.1  glycosyltransferase BC10-like isoform X1

      UniProtKB/TrEMBL
      B9FQQ8, Q0D9T0, Q5Z845
      Conserved Domains (1) summary
      pfam02485
      Location:87 → 316
      Branch; Core-2/I-Branching enzyme

    3. XM_015785405.3 → XP_015640891.1  glycosyltransferase BC10-like isoform X2

      UniProtKB/TrEMBL
      B7EKK3
      Conserved Domains (1) summary
      pfam02485
      Location:1 → 228
      Branch; Core-2/I-Branching enzyme

    4. XM_015785403.3 → XP_015640889.1  glycosyltransferase BC10-like isoform X1

      UniProtKB/TrEMBL
      B9FQQ8, Q0D9T0, Q5Z845
      Conserved Domains (1) summary
      pfam02485
      Location:87 → 316
      Branch; Core-2/I-Branching enzyme
    Nucleotide Protein
    Heading Accession and Version

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