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    LOC4326934 uncharacterized LOC4326934 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326934, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326934
    Gene description
    uncharacterized LOC4326934
    Locus tag
    OSNPB_010702400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.1), roots before flowering (RPKM 7.8) and 6 other tissues See more
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    Genomic context

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    See LOC4326934 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29698131..29707542)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29109934..29119354)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene bifunctional nuclease 1-like Neighboring gene subtilisin-like protease SBT5.4 Neighboring gene chaperone protein dnaJ 10 Neighboring gene dehydrin Rab25-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIIC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326934
    Names
    Os01g0702400
    P0421H07.11
    transducin family protein / WD-40 repeat family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29698131..29707542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765649.3 → XP_015621135.1  uncharacterized protein LOC4326934 isoform X1

      UniProtKB/TrEMBL
      B8A8A9, B9EZ13
      Conserved Domains (3) summary
      sd00039
      Location:400 → 455
      7WD40; WD40 repeat [structural motif]
      pfam12657
      Location:15 → 151
      TFIIIC_delta; Transcription factor IIIC subunit delta N-term
      cl29593
      Location:388 → 552
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015765650.3 → XP_015621136.1  uncharacterized protein LOC4326934 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V710, B8A8A9, Q5N9R6
      Conserved Domains (4) summary
      COG2319
      Location:353 → 608
      WD40; WD40 repeat [General function prediction only]
      pfam12657
      Location:15 → 165
      TFIIIC_delta; Transcription factor IIIC subunit delta N-term
      sd00039
      Location:400 → 455
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:388 → 552
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_026020318.2 → XP_025876103.1  uncharacterized protein LOC4326934 isoform X3

      UniProtKB/TrEMBL
      B8A8A9
      Conserved Domains (3) summary
      sd00039
      Location:326 → 381
      7WD40; WD40 repeat [structural motif]
      pfam12657
      Location:14 → 72
      TFIIIC_delta; Transcription factor IIIC subunit delta N-term
      cl25539
      Location:314 → 478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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