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    LOC4327021 protein NRT1/ PTR FAMILY 1.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327021, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327021
    Gene description
    protein NRT1/ PTR FAMILY 1.2
    Locus tag
    OSNPB_010761400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327021 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32637618..32642116, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32032664..32037657, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein tesmin/TSO1-like CXC 5 Neighboring gene probable CoA ligase CCL8 Neighboring gene protein NRT1/ PTR FAMILY 1.2 Neighboring gene probable isoaspartyl peptidase/L-asparaginase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 1.2
    Names
    Os01g0761400
    P0460E08.28
    P0512C01.21
    putative nitrite transporter
    putative peptide transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32637618..32642116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766279.3 → XP_015621765.1  protein NRT1/ PTR FAMILY 1.2 isoform X2

      UniProtKB/TrEMBL
      A2WVB1
      Conserved Domains (1) summary
      cl21472
      Location:90 → 519
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    2. XM_015766277.3 → XP_015621763.1  protein NRT1/ PTR FAMILY 1.2 isoform X2

      UniProtKB/TrEMBL
      A2WVB1
      Conserved Domains (1) summary
      cl21472
      Location:90 → 519
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    3. XM_015766276.3 → XP_015621762.1  protein NRT1/ PTR FAMILY 1.2 isoform X1

      UniProtKB/TrEMBL
      A2WVB1, A2ZY24, Q7F4X3, Q94DS0
      Conserved Domains (1) summary
      cl28910
      Location:26 → 554
      MFS; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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