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    LOC4329725 ent-isokaurene C2/C3-hydroxylase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329725, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329725
    Gene description
    ent-isokaurene C2/C3-hydroxylase-like
    Locus tag
    OSNPB_020570500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CYP71Z6; OsJ_07206
    Expression
    Broad expression in leaves before flowering (RPKM 18.9), roots after flowering (RPKM 16.6) and 4 other tissues See more
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    Genomic context

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    See LOC4329725 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22268605..22271736)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21788091..21791256)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279928 Neighboring gene ent-cassa-12,15-diene synthase-like Neighboring gene uncharacterized LOC107280119 Neighboring gene ent-cassadiene hydroxylase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ent-isokaurene C2/C3-hydroxylase
    Names
    Cytochrome P450 71Z6
    Ent-isokaurene C2/C3-hydroxylase
    LOC_Os02g36150
    OSJNBa0008E01.28
    ent-isokaurene C2-hydroxylase
    putative cytochrome P450
    NP_001403616.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416687.1 → NP_001403616.1  ent-isokaurene C2/C3-hydroxylase

      Status: VALIDATED

      Source sequence(s)
      AK107418, AP014958
      UniProtKB/Swiss-Prot
      A3A871, Q6YV92

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22268605..22271736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3A871.1 GenPept UniProtKB/Swiss-Prot:A3A871

    Gene LinkOut

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    Research Materials