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    LOC4331880 transport inhibitor response 1-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331880, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331880
    Gene description
    transport inhibitor response 1-like protein
    Locus tag
    OSNPB_030187500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 23.5), flowers (RPKM 10.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331880 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4595745..4598383, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4584344..4586998, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938317 Neighboring gene uncharacterized LOC4331879 Neighboring gene GEM-like protein 1 Neighboring gene bet1-like protein At4g14600

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transport inhibitor response 1-like protein
    Names
    Os03g0187500
    putative AUXIN SIGNALING F-BOX 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4595745..4598383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772384.3 → XP_015627870.1  transport inhibitor response 1-like protein

      UniProtKB/TrEMBL
      A3AEX7, Q10QQ6, Q8H7P5
      Conserved Domains (4) summary
      cd09293
      Location:320 → 522
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:322 → 346
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam18511
      Location:24 → 65
      F-box_5
      pfam18791
      Location:84 → 115
      Transp_inhibit; Transport inhibitor response 1 protein domain
    Nucleotide Protein
    Heading Accession and Version

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