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    LOC4328861 peroxisome biogenesis protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328861, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328861
    Gene description
    peroxisome biogenesis protein 7
    Locus tag
    OSNPB_020245100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1134_F06.8-1
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    Genomic context

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    See LOC4328861 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8230550..8231734, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8204968..8206397, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phosphoenolpyruvate carboxylase 1 Neighboring gene probable splicing factor 3A subunit 1 Neighboring gene uncharacterized LOC136355321 Neighboring gene uncharacterized LOC4328862 Neighboring gene uncharacterized LOC136355320

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peroxisome matrix targeting signal-2 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome biogenesis protein 7
    Names
    Os02g0245100
    WD domain, G-beta repeat domain-containing protein
    putative peroxisomal targeting signal type 2 receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      8230550..8231734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769172.3 → XP_015624658.1  peroxisome biogenesis protein 7

      UniProtKB/TrEMBL
      A2X2W2, Q0E2F5, Q6EUD4
      Conserved Domains (2) summary
      cd00200
      Location:65 → 313
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:68 → 109
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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