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    LOC4343224 NEP1-interacting protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343224, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343224
    Gene description
    NEP1-interacting protein 2
    Locus tag
    OSNPB_070479100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343224 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17565502..17568643)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17399807..17403059)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357432 Neighboring gene uncharacterized LOC107281622 Neighboring gene mannose-P-dolichol utilization defect 1 protein homolog 2 Neighboring gene serine carboxypeptidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NEP1-interacting protein 2
    Names
    Os07g0479100
    P0434A03.105-1
    P0434A03.105-2
    P0640E12.144-1
    P0640E12.144-2
    putative NEP1-interacting protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17565502..17568643
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789521.3 → XP_015645007.1  NEP1-interacting protein 2

      UniProtKB/TrEMBL
      A0A5S6RCP2, B9FX70, Q0D6H7, Q7XI81
      Conserved Domains (1) summary
      cd16454
      Location:196 → 239
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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