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    LOC4345874 trihelix transcription factor ASIL2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345874, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345874
    Gene description
    trihelix transcription factor ASIL2
    Locus tag
    OSNPB_080484700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345874 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24091182..24092829)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23951244..23953060)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like Neighboring gene serine/threonine protein kinase OSK4-like Neighboring gene uncharacterized LOC4345875 Neighboring gene protein EXORDIUM-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trihelix transcription factor ASIL2
    Names
    Os08g0484700
    P0419H09.21
    proline-rich protein family-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24091182..24092829
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792893.3 → XP_015648379.1  trihelix transcription factor ASIL2

      UniProtKB/TrEMBL
      A3BU87, Q0J4W7, Q6YTS9
      Conserved Domains (1) summary
      pfam13837
      Location:26 → 111
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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