U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4349988 lipase-like PAD4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349988, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4349988
    Gene description
    lipase-like PAD4
    Locus tag
    OSNPB_110195500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 95.4), leaves before flowering (RPKM 46.6) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4349988 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4840371..4844641)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4784987..4789380)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein translocase subunit SECA2, chloroplastic Neighboring gene EID1-like F-box protein 3 Neighboring gene amino acid permease 3 Neighboring gene uncharacterized LOC136354082

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions. Ke Y, et al. Plant J, 2014 May. PMID 24617729

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lipase-like PAD4
    Names
    Os11g0195500

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4840371..4844641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762065.3 → XP_015617551.1  lipase-like PAD4 isoform X1

      UniProtKB/TrEMBL
      A3C9G2, Q2R9E7, Q53LH1
      Conserved Domains (2) summary
      pfam18117
      Location:435 → 659
      EDS1_EP; Enhanced disease susceptibility 1 protein EP domain
      cl21494
      Location:125 → 227
      Abhydrolase; alpha/beta hydrolases

    2. XM_066305245.1 → XP_066161342.1  lipase-like PAD4 isoform X2

      UniProtKB/TrEMBL
      Q0IU28
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials