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    LOC4351213 metallothionein-like protein 1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351213, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351213
    Gene description
    metallothionein-like protein 1A
    Locus tag
    OSNPB_110704500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MT-1; MT1A; ERR26; OsMT-1; OsMT1a; rgMT-1; OsJ_34866; OsMT-I-1a
    Expression
    Biased expression in roots before flowering (RPKM 2155.4), leaves after flowering (RPKM 526.6) and 2 other tissues See more
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    Genomic context

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    See LOC4351213 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (30881530..30882360)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28827679..28828436)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable GTP-binding protein OBGM, mitochondrial Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC136354060 Neighboring gene glucan endo-1,3-beta-glucosidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. RNA expression patterns of a type 2 metallothionein-like gene from rice. Hsieh HM, et al. Plant Mol Biol, 1996 Nov. PMID 8980501
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metallothionein-like protein 1A
    Names
    Class I metallothionein-like protein 1A
    LOC_Os11g47809
    metallothionein-like type 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404597.1 → NP_001391526.1  metallothionein-like protein 1A

      Status: VALIDATED

      Source sequence(s)
      CF313106, CI654083
      UniProtKB/Swiss-Prot
      A2ZH20, B9G8W2, O04739, O22489, P0C5B3, Q40633, Q53MA9, Q53NN5, Q53WW8, Q6RUN8
      UniProtKB/TrEMBL
      B2ZSV7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      30881530..30882360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C5B3.1 GenPept UniProtKB/Swiss-Prot:P0C5B3

    Gene LinkOut

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