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    LOC4351991 ultraviolet-B receptor UVR8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351991, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351991
    Gene description
    ultraviolet-B receptor UVR8
    Locus tag
    OSNPB_120284000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 37.5), roots before flowering (RPKM 34.8) and 6 other tissues See more
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    Genomic context

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    See LOC4351991 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10832302..10836676)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10770958..10775344)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein RETICULATA-RELATED 1, chloroplastic Neighboring gene protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic Neighboring gene uncharacterized LOC107277024 Neighboring gene uncharacterized LOC136354805 Neighboring gene uncharacterized LOC136354625

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ultraviolet-B receptor UVR8
    Names
    Os12g0284000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10832302..10836676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764478.3 → XP_015619964.1  ultraviolet-B receptor UVR8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YAE9, B8BP53, B9GCP0, Q0INW4, Q2QTS8
      Conserved Domains (1) summary
      COG5184
      Location:157 → 513
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    2. XM_015764480.3 → XP_015619966.1  ultraviolet-B receptor UVR8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YAE9, B8BP53, B9GCP0, Q0INW4, Q2QTS8
      Conserved Domains (1) summary
      COG5184
      Location:157 → 513
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    3. XM_015764479.3 → XP_015619965.1  ultraviolet-B receptor UVR8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YAE9, B8BP53, B9GCP0, Q0INW4, Q2QTS8
      Conserved Domains (1) summary
      COG5184
      Location:157 → 513
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    4. XM_015764481.3 → XP_015619967.1  ultraviolet-B receptor UVR8 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YAE9, B8BP53, B9GCP0, Q0INW4, Q2QTS8
      Conserved Domains (1) summary
      COG5184
      Location:157 → 513
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    5. XM_066306546.1 → XP_066162643.1  ultraviolet-B receptor UVR8 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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