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    LOC9272105 uncharacterized protein At1g66480 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272105, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272105
    Gene description
    uncharacterized protein At1g66480
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 4.7), flowers (RPKM 4.5) and 6 other tissues See more
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    Genomic context

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    See LOC9272105 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20835673..20840431, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20698454..20703316, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene HMG-Y-related protein A Neighboring gene putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C Neighboring gene uncharacterized LOC136351591 Neighboring gene uncharacterized LOC136351592

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein At1g66480
    Names
    P0479C08.115

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20835673..20840431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792950.3 → XP_015648436.1  uncharacterized protein At1g66480

      UniProtKB/TrEMBL
      Q8H3L6
      Conserved Domains (1) summary
      pfam14009
      Location:1 → 135
      DUF4228; Domain of unknown function (DUF4228)
    Nucleotide Protein
    Heading Accession and Version

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