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    LOC4344078 stomatal closure-related actin-binding protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344078, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344078
    Gene description
    stomatal closure-related actin-binding protein 1
    Locus tag
    OSNPB_070642800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_C06.117
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    Genomic context

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    See LOC4344078 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26995468..27001212)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26768377..26774121)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 Neighboring gene probable mediator of RNA polymerase II transcription subunit 26b Neighboring gene gamma carbonic anhydrase 2, mitochondrial Neighboring gene probable carboxylesterase 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of stomatal movement IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stomatal closure-related actin-binding protein 1
    Names
    Os07g0642800
    P0524G08.133

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26995468..27001212
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790112.1 → XP_015645598.1  stomatal closure-related actin-binding protein 1

      UniProtKB/TrEMBL
      A2YP74, A3BMQ0, Q7XHY6
      Conserved Domains (4) summary
      pfam16711
      Location:57 → 97
      SCAB-ABD; Actin-binding domain of plant-specific actin-binding protein
      pfam16709
      Location:283 → 380
      SCAB-IgPH; Fused Ig-PH domain of plant-specific actin-binding protein
      pfam16712
      Location:102 → 269
      SCAB_CC; Coiled-coil regions of plant-specific actin-binding protein
      pfam17684
      Location:383 → 490
      SCAB-PH; PH domain of plant-specific actin-binding protein
    Nucleotide Protein
    Heading Accession and Version

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