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    LOC4326304 protein indeterminate-domain 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326304, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326304
    Gene description
    protein indeterminate-domain 7
    Locus tag
    OSNPB_010572300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1151A10.2
    Expression
    Broad expression in flower buds (RPKM 10.4), flowers (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326304 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22562805..22567641)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21992711..21997047)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 7-like Neighboring gene uncharacterized LOC136354537 Neighboring gene uncharacterized LOC107281760 Neighboring gene uncharacterized LOC4326305

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 7
    Names
    B1129G05.21
    Os01g0572300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22562805..22567641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766716.3 → XP_015622202.1  protein indeterminate-domain 7

      UniProtKB/TrEMBL
      A0A0N7KD71, Q0JLT2
      Conserved Domains (1) summary
      sd00017
      Location:96 → 116
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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