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    LOC4338659 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338659, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338659
    Gene description
    UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 2.6), flower buds (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18830270..18833197)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18728868..18732065)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276993 Neighboring gene uncharacterized LOC4338657 Neighboring gene COBRA-like protein 3 Neighboring gene uncharacterized LOC112936017 Neighboring gene UDP-sulfoquinovose synthase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-xylosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rhamnogalacturonan II biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
    Names
    Os05g0386900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18830270..18833197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311086.1 → XP_066167183.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WLV4, A2Y471, B9FI16, Q60E68

    2. XM_066311087.1 → XP_066167184.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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